Catalog
obra/systematic-debugging

obra

systematic-debugging

Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes

NewUpdated Sep 9, 2026

Systematic Debugging

Overview

Core principle: ALWAYS find root cause before attempting fixes. Symptom fixes are failure.

Violating the letter of this process is violating the spirit of debugging.

The Iron Law

NO FIXES WITHOUT ROOT CAUSE INVESTIGATION FIRST

If you haven't completed Phase 1, you cannot propose fixes.

When to Use

Use for ANY technical issue:

  • Test failures
  • Bugs in production
  • Unexpected behavior
  • Performance problems
  • Build failures
  • Integration issues

Use this ESPECIALLY when:

  • Under time pressure (emergencies make guessing tempting)
  • "Just one quick fix" seems obvious
  • You've already tried multiple fixes
  • Previous fix didn't work
  • You don't fully understand the issue

Don't skip when:

  • Issue seems simple (simple bugs have root causes too)
  • You're in a hurry (rushing guarantees rework)
  • Manager wants it fixed NOW (systematic is faster than thrashing)

The Four Phases

You MUST complete each phase before proceeding to the next.

Phase 1: Root Cause Investigation

BEFORE attempting ANY fix:

  1. Read Error Messages Carefully

    • Don't skip past errors or warnings
    • They often contain the exact solution
    • Read stack traces completely
    • Note line numbers, file paths, error codes
  2. Reproduce Consistently

    • Can you trigger it reliably?
    • What are the exact steps?
    • Does it happen every time?
    • If not reproducible → gather more data, don't guess
  3. Check Recent Changes

    • What changed that could cause this?
    • Git diff, recent commits
    • New dependencies, config changes
    • Environmental differences
  4. Gather Evidence in Multi-Component Systems

    WHEN system has multiple components (CI → build → signing, API → service → database):

    BEFORE proposing fixes, add diagnostic instrumentation:

    For EACH component boundary:
      - Log what data enters component
      - Log what data exits component
      - Verify environment/config propagation
      - Check state at each layer
    
    Run once to gather evidence showing WHERE it breaks
    THEN analyze evidence to identify failing component
    THEN investigate that specific component
    

    Example (multi-layer system):

    # Layer 1: Workflow
    echo "=== Secrets available in workflow: ==="
    echo "IDENTITY: ${IDENTITY:+SET}${IDENTITY:-UNSET}"
    
    # Layer 2: Build script
    echo "=== Env vars in build script: ==="
    env | grep IDENTITY || echo "IDENTITY not in environment"
    
    # Layer 3: Signing script
    echo "=== Keychain state: ==="
    security list-keychains
    security find-identity -v
    
    # Layer 4: Actual signing
    codesign --sign "$IDENTITY" --verbose=4 "$APP"
    

    This reveals: Which layer fails (secrets → workflow ✓, workflow → build ✗)

  5. Trace Data Flow

    WHEN error is deep in call stack:

    See root-cause-tracing.md in this directory for the complete backward tracing technique.

    Quick version:

    • Where does bad value originate?
    • What called this with bad value?
    • Keep tracing up until you find the source
    • Fix at source, not at symptom

Phase 2: Pattern Analysis

Find the pattern before fixing:

  1. Find Working Examples

    • Locate similar working code in same codebase
    • What works that's similar to what's broken?
  2. Compare Against References

    • If implementing pattern, read reference implementation COMPLETELY
    • Don't skim - read every line
    • Understand the pattern fully before applying
  3. Identify Differences

    • What's different between working and broken?
    • List every difference, however small
    • Don't assume "that can't matter"
  4. Understand Dependencies

    • What other components does this need?
    • What settings, config, environment?
    • What assumptions does it make?

Phase 3: Hypothesis and Testing

Scientific method:

  1. Form Single Hypothesis

    • State clearly: "I think X is the root cause because Y"
    • Write it down
    • Be specific, not vague
  2. Test Minimally

    • Make the SMALLEST possible change to test hypothesis
    • One variable at a time
    • Don't fix multiple things at once
  3. Verify Before Continuing

    • Did it work? Yes → Phase 4
    • Didn't work? Form NEW hypothesis
    • DON'T add more fixes on top
  4. When You Don't Know

    • Say "I don't understand X"
    • Don't pretend to know
    • Ask for help
    • Research more

Phase 4: Implementation

Fix the root cause, not the symptom:

  1. Create Failing Test Case

    • Simplest possible reproduction
    • Automated test if possible
    • One-off test script if no framework
    • MUST have before fixing
    • Use the superpowers:test-driven-development skill for writing proper failing tests
  2. Implement Single Fix

    • Address the root cause identified
    • ONE change at a time
    • No "while I'm here" improvements
    • No bundled refactoring
  3. Verify Fix

    • Test passes now?
    • No other tests broken?
    • Issue actually resolved?
    • Use the superpowers:verification-before-completion skill before claiming success
  4. If Fix Doesn't Work

    • STOP
    • Count: How many fixes have you tried?
    • If < 3: Return to Phase 1, re-analyze with new information
    • If ≥ 3: STOP and question the architecture (step 5 below)
    • DON'T attempt Fix #4 without architectural discussion
  5. If 3+ Fixes Failed: Question Architecture

    Pattern indicating architectural problem:

    • Each fix reveals new shared state/coupling/problem in different place
    • Fixes require "massive refactoring" to implement
    • Each fix creates new symptoms elsewhere

    STOP and question fundamentals:

    • Is this pattern fundamentally sound?
    • Are we "sticking with it through sheer inertia"?
    • Should we refactor architecture vs. continue fixing symptoms?

    Discuss with your human partner before attempting more fixes

    This is NOT a failed hypothesis - this is a wrong architecture.

Red Flags - STOP and Follow Process

If you catch yourself thinking:

  • "Quick fix for now, investigate later"
  • "Just try changing X and see if it works"
  • "Add multiple changes, run tests"
  • "Skip the test, I'll manually verify"
  • "It's probably X, let me fix that"
  • "I don't fully understand but this might work"
  • "Pattern says X but I'll adapt it differently"
  • "Here are the main problems: [lists fixes without investigation]"
  • Proposing solutions before tracing data flow
  • "One more fix attempt" (when already tried 2+)
  • Each fix reveals new problem in different place

ALL of these mean: STOP. Return to Phase 1.

If 3+ fixes failed: Question the architecture (see Phase 4.5)

your human partner's Signals You're Doing It Wrong

Watch for these redirections:

  • "Is that not happening?" - You assumed without verifying
  • "Will it show us...?" - You should have added evidence gathering
  • "Stop guessing" - You're proposing fixes without understanding
  • "Ultra-think this" - Question fundamentals, not just symptoms
  • "We're stuck?" (frustrated) - Your approach isn't working

When you see these: STOP. Return to Phase 1.

Common Rationalizations

Excuse Reality
"Issue is simple, don't need process" Simple issues have root causes too. Process is fast for simple bugs.
"Emergency, no time for process" Systematic debugging is FASTER than guess-and-check thrashing.
"Just try this first, then investigate" First fix sets the pattern. Do it right from the start.
"I'll write test after confirming fix works" Untested fixes don't stick. Test first proves it.
"Multiple fixes at once saves time" Can't isolate what worked. Causes new bugs.
"Reference too long, I'll adapt the pattern" Partial understanding guarantees bugs. Read it completely.
"I see the problem, let me fix it" Seeing symptoms ≠ understanding root cause.
"One more fix attempt" (after 2+ failures) 3+ failures = architectural problem. Question pattern, don't fix again.

Quick Reference

Phase Key Activities Success Criteria
1. Root Cause Read errors, reproduce, check changes, gather evidence Understand WHAT and WHY
2. Pattern Find working examples, compare Identify differences
3. Hypothesis Form theory, test minimally Confirmed or new hypothesis
4. Implementation Create test, fix, verify Bug resolved, tests pass

When Process Reveals "No Root Cause"

If systematic investigation reveals issue is truly environmental, timing-dependent, or external:

  1. You've completed the process
  2. Document what you investigated
  3. Implement appropriate handling (retry, timeout, error message)
  4. Add monitoring/logging for future investigation

But: 95% of "no root cause" cases are incomplete investigation.

Supporting Techniques

These techniques are part of systematic debugging and available in this directory:

  • root-cause-tracing.md - Trace bugs backward through call stack to find original trigger
  • defense-in-depth.md - Add validation at multiple layers after finding root cause
  • condition-based-waiting.md - Replace arbitrary timeouts with condition polling
Files11
11 files · 31.6 KB

Select a file to preview

Overall Score

88/100

Grade

A

Excellent

Grades are signals, not a certification. Always review a skill yourself before use.

Safety

88

Quality

90

Clarity

87

Completeness

84

Summary

The systematic-debugging skill provides a structured four-phase process (Root Cause Investigation → Pattern Analysis → Hypothesis & Testing → Implementation) for finding root causes before proposing fixes. It emphasizes that symptom-fixing without root cause analysis is a failure mode, includes guardrails against shortcuts under time pressure, and references supporting techniques in companion markdown files. The skill is designed to resist rationalization and guide agents through rigorous debugging even when quick fixes seem tempting.

Static Analysis Findings

1 finding

Patterns detected by deterministic static analysis before AI scoring. Hover over any finding code for detailed information and remediation guidance.

Credential Exposure
SEC-020Direct .env File Access2x in 2 files

Direct .env file access

root-cause-tracing.md.env
defense-in-depth.md.env

Detected Capabilities

Read error messages and logsReproduce issues and verify stepsAnalyze git history and recent changesTrace call stacks and data flowGather diagnostic evidence and instrumentationCompare code patterns between working and broken implementationsForm and test hypothesesWrite and run failing test casesVerify fixes with test suites

Trigger Keywords

Phrases that agents use to match this skill to user intent.

root cause debuggingtest failure investigationproduction error tracefind bug sourcemulti-layer system issuefix hypothesis testingdebug test pollutionprevent symptom fixes

Risk Signals

INFO

SEC-020: Direct .env file access referenced in root-cause-tracing.md and defense-in-depth.md

root-cause-tracing.md, defense-in-depth.md | Matches: `.env`
INFO

Environment variable access for debugging (NODE_ENV check, logging sensitive env vars)

defense-in-depth.md line: git init environment guard
INFO

Stack trace logging captures execution context including directory and process state

root-cause-tracing.md, defense-in-depth.md | console.error output

Use Cases

  • Investigate test failures before proposing test modifications
  • Debug production errors by tracing data flow backward through call stacks
  • Find root causes in multi-layer systems (workflow → build → signing chains)
  • Prevent repeated fix attempts on undiagnosed problems
  • Guide systematic investigation under time pressure or emergencies
  • Train agents to question architectural problems when multiple fixes fail
  • Validate hypothesis with minimal changes before full implementation
  • Add defensive validation layers across system boundaries after root cause is found

Quality Notes

  • Excellent: Clear anti-patterns section that explicitly lists rationalization shortcuts (e.g., 'Quick fix for now, investigate later'), creating cognitive friction when agent recognizes its own impulses
  • Excellent: Four-phase structure is unambiguous with specific success criteria for each phase
  • Excellent: 'Iron Law' (NO FIXES WITHOUT ROOT CAUSE) is stated prominently and reinforced throughout with pressure-resistant language
  • Excellent: Concrete examples (multi-layer diagnostics, stack traces, git bisection) make the process actionable
  • Excellent: Companion files (root-cause-tracing.md, defense-in-depth.md, condition-based-waiting.md) provide concrete supporting techniques with code examples
  • Excellent: Test pressure scenarios (test-pressure-1/2/3.md) model real situations where shortcuts are tempting, reinforcing when to resist
  • Very Good: Flowchart showing decision points helps agents navigate phase transitions and failure recovery
  • Very Good: 'Red Flags' section catches exact mental patterns agent would use to justify skipping steps
  • Good: Links to related skills (test-driven-development, verification-before-completion) clarify relationships
  • Good: Shell script (find-polluter.sh) automates binary search for test pollution
  • Minor: Some redundancy between overview and 'Iron Law' section—could be more concise but redundancy serves defensive purpose
Model: claude-haiku-4-5-20251001Analyzed: Sep 9, 2026

Reviews

Add this skill to your library to leave a review.

No reviews yet

Be the first to share your experience.

Version History

  1. v1.2

    Content updated

    ✦ AIRemoves introductory warning against random fixes and impact metrics; adds reference to verification-before-completion skill in Phase 4 checklist.

    2026-09-09

    LATEST
  2. v1.1

    Content updated

    ✦ AICorrects hyphenation in guideline text (Ultrathink → Ultra-think).

    2026-06-28

    View This Version
  3. v1.0

    2026-05-02

    View This VersionInitial version

Use obra/systematic-debugging in your dev environment

Command Palette

Search for a command to run...